HL_4WSM_152

3D structure

PDB id

4WSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UAUUGAAGCA

Length

10 nucleotides

Bulged bases

4WSM|1|1H|C|574

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WSM_152 not in the Motif Atlas

Geometric match to HL_7RQB_018

Geometric discrepancy: 0.0617

The information below is about HL_7RQB_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41998.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

69

Unit IDs

4WSM|1|1H|U|566
4WSM|1|1H|A|567
4WSM|1|1H|U|568
4WSM|1|1H|U|569
4WSM|1|1H|G|570
4WSM|1|1H|A|571
4WSM|1|1H|A|572
4WSM|1|1H|G|573
4WSM|1|1H|C|574
4WSM|1|1H|A|575

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L3

Chain 78

50S ribosomal protein L15

Chain D8

50S ribosomal protein L21

Chain N8

50S ribosomal protein L32