HL_4WSM_236

3D structure

PDB id

4WSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGUUCGGCC

Length

9 nucleotides

Bulged bases

4WSM|1|1G|U|1136, 4WSM|1|1G|C|1137, 4WSM|1|1G|G|1139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WSM_236 not in the Motif Atlas

Geometric match to HL_8C3A_021

Geometric discrepancy: 0.3452

The information below is about HL_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4WSM|1|1G|G|1133
4WSM|1|1G|G|1134
4WSM|1|1G|U|1135
4WSM|1|1G|U|1136
4WSM|1|1G|C|1137
4WSM|1|1G|G|1138
4WSM|1|1G|G|1139
4WSM|1|1G|C|1140
4WSM|1|1G|C|1141

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 82

30S ribosomal protein S9