HL_4WT1_078

3D structure

PDB id

4WT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

UUUACCAAAAA

Length

11 nucleotides

Bulged bases

4WT1|1|14|A|1780, 4WT1|1|14|C|1781, 4WT1|1|14|C|1782, 4WT1|1|14|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WT1_078 not in the Motif Atlas

Homologous match to HL_7RQB_045

Geometric discrepancy: 0.0574

The information below is about HL_7RQB_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.5

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

4WT1|1|14|U|1777
4WT1|1|14|U|1778
4WT1|1|14|U|1779
4WT1|1|14|A|1780
4WT1|1|14|C|1781
4WT1|1|14|C|1782
4WT1|1|14|A|1783
4WT1|1|14|A|1784
4WT1|1|14|A|1785
4WT1|1|14|A|1786
4WT1|1|14|A|1787

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L2

Chain L5

50S ribosomal protein L34