HL_4WT1_153

3D structure

PDB id

4WT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

UAUUGAAGCA

Length

10 nucleotides

Bulged bases

4WT1|1|1H|C|574

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WT1_153 not in the Motif Atlas

Homologous match to HL_7RQB_018

Geometric discrepancy: 0.0722

The information below is about HL_7RQB_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41998.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

69

Unit IDs

4WT1|1|1H|U|566
4WT1|1|1H|A|567
4WT1|1|1H|U|568
4WT1|1|1H|U|569
4WT1|1|1H|G|570
4WT1|1|1H|A|571
4WT1|1|1H|A|572
4WT1|1|1H|G|573
4WT1|1|1H|C|574
4WT1|1|1H|A|575

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L3

Chain 78

50S ribosomal protein L15

Chain D8

50S ribosomal protein L21

Chain N8

50S ribosomal protein L32