HL_4WT1_159

3D structure

PDB id

4WT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GGAUGCAAAC

Length

10 nucleotides

Bulged bases

4WT1|1|1H|U|747, 4WT1|1|1H|A|751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WT1_159 not in the Motif Atlas

Homologous match to HL_7RQB_023

Geometric discrepancy: 0.0553

The information below is about HL_7RQB_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.6

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

6

Unit IDs

4WT1|1|1H|G|744
4WT1|1|1H|G|745
4WT1|1|1H|A|746
4WT1|1|1H|U|747
4WT1|1|1H|G|748
4WT1|1|1H|C|749
4WT1|1|1H|A|750
4WT1|1|1H|A|751
4WT1|1|1H|A|752
4WT1|1|1H|C|753

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L3

Chain E8

50S ribosomal protein L22

Chain N8

50S ribosomal protein L32

Chain P8

50S ribosomal protein L34