HL_4WT1_202

3D structure

PDB id

4WT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

4WT1|1|1H|G|2751, 4WT1|1|1H|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WT1_202 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.0777

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

4WT1|1|1H|C|2745
4WT1|1|1H|U|2746
4WT1|1|1H|G|2747
4WT1|1|1H|A|2748
4WT1|1|1H|A|2749
4WT1|1|1H|A|2750
4WT1|1|1H|G|2751
4WT1|1|1H|C|2752
4WT1|1|1H|A|2753
4WT1|1|1H|U|2754
4WT1|1|1H|C|2755
4WT1|1|1H|U|2756
4WT1|1|1H|A|2757
4WT1|1|1H|A|2758
4WT1|1|1H|G|2759

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 51

50S ribosomal protein L6

Chain 58

50S ribosomal protein L13