HL_4WT8_006

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

4WT8|1|Ab|G|262

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WT8_006 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.0887

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4WT8|1|Ab|G|255
4WT8|1|Ab|G|256
4WT8|1|Ab|U|257
4WT8|1|Ab|A|258
4WT8|1|Ab|A|259
4WT8|1|Ab|U|260
4WT8|1|Ab|G|261
4WT8|1|Ab|G|262
4WT8|1|Ab|C|263

Current chains

Chain Ab

RNA (1504-MER)

Nearby chains

Chain AR

30S ribosomal protein S17

Chain AU

30S ribosomal protein S20