HL_4WT8_083

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGAACAG

Length

7 nucleotides

Bulged bases

4WT8|1|C1|C|669

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WT8_083 not in the Motif Atlas

Homologous match to HL_4WF9_021

Geometric discrepancy: 0.2697

The information below is about HL_4WF9_021

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4WT8|1|C1|C|665
4WT8|1|C1|G|666
4WT8|1|C1|A|667
4WT8|1|C1|A|668
4WT8|1|C1|C|669
4WT8|1|C1|A|670
4WT8|1|C1|G|671

Current chains

Chain C1

23S rRNA (2899-MER)

Nearby chains

Chain C7

50S ribosomal protein L33

Chain C9

50S ribosomal protein L35

Chain CO

50S ribosomal protein L15