HL_4WT8_107

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UUUACCAAAAA

Length

11 nucleotides

Bulged bases

4WT8|1|C1|A|1810, 4WT8|1|C1|C|1811, 4WT8|1|C1|C|1812, 4WT8|1|C1|A|1816

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WT8_107 not in the Motif Atlas

Homologous match to HL_4WF9_043

Geometric discrepancy: 0.0973

The information below is about HL_4WF9_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

4WT8|1|C1|U|1807
4WT8|1|C1|U|1808
4WT8|1|C1|U|1809
4WT8|1|C1|A|1810
4WT8|1|C1|C|1811
4WT8|1|C1|C|1812
4WT8|1|C1|A|1813
4WT8|1|C1|A|1814
4WT8|1|C1|A|1815
4WT8|1|C1|A|1816
4WT8|1|C1|A|1817

Current chains

Chain C1

23S rRNA (2899-MER)

Nearby chains

Chain C8

50S ribosomal protein L34

Chain CB

50S ribosomal protein L2