HL_4WT8_111

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

4WT8|1|C1|U|1976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WT8_111 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.0874

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

4WT8|1|C1|G|1970
4WT8|1|C1|G|1971
4WT8|1|C1|U|1972
4WT8|1|C1|A|1973
4WT8|1|C1|A|1974
4WT8|1|C1|G|1975
4WT8|1|C1|U|1976
4WT8|1|C1|U|1977
4WT8|1|C1|C|1978

Current chains

Chain C1

23S rRNA (2899-MER)

Nearby chains

Chain Ab

Small subunit ribosomal RNA; SSU rRNA

Chain CN

50S ribosomal protein L14