HL_4WT8_112

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

4WT8|1|C1|A|2051, 4WT8|1|C1|A|2052, 4WT8|1|C1|G|2053

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WT8_112 not in the Motif Atlas

Homologous match to HL_7RQB_050

Geometric discrepancy: 0.1213

The information below is about HL_7RQB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

4WT8|1|C1|G|2048
4WT8|1|C1|U|2049
4WT8|1|C1|G|2050
4WT8|1|C1|A|2051
4WT8|1|C1|A|2052
4WT8|1|C1|G|2053
4WT8|1|C1|A|2054
4WT8|1|C1|U|2055
4WT8|1|C1|G|2056
4WT8|1|C1|C|2057

Current chains

Chain C1

23S rRNA (2899-MER)

Nearby chains

Chain C6

50S ribosomal protein L32

Chain CC

50S ribosomal protein L3

Chain CU

50S ribosomal protein L21