HL_4WT8_138
3D structure
- PDB id
- 4WT8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- CAGCCUGGUAG
- Length
- 11 nucleotides
- Bulged bases
- 4WT8|1|C4|C|16, 4WT8|1|C4|G|19, 4WT8|1|C4|G|20, 4WT8|1|C4|U|21
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4WT8_138 not in the Motif Atlas
- Homologous match to HL_4TUE_033
- Geometric discrepancy: 0.1566
- The information below is about HL_4TUE_033
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_93616.2
- Basepair signature
- cWW-cWS-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
4WT8|1|C4|C|13
4WT8|1|C4|A|14
4WT8|1|C4|G|15
4WT8|1|C4|C|16
4WT8|1|C4|C|17
4WT8|1|C4|U|18
4WT8|1|C4|G|19
4WT8|1|C4|G|20
4WT8|1|C4|U|21
4WT8|1|C4|A|22
4WT8|1|C4|G|23
Current chains
- Chain C4
- P site trNA
Nearby chains
- Chain C1
- Large subunit ribosomal RNA; LSU rRNA
- Chain CE
- 50S ribosomal protein L5
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