HL_4WT8_154

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GUGAAAGCC

Length

9 nucleotides

Bulged bases

4WT8|1|D1|G|352, 4WT8|1|D1|A|353, 4WT8|1|D1|A|354

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WT8_154 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.1199

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

4WT8|1|D1|G|350
4WT8|1|D1|U|351
4WT8|1|D1|G|352
4WT8|1|D1|A|353
4WT8|1|D1|A|354
4WT8|1|D1|A|355
4WT8|1|D1|G|356
4WT8|1|D1|C|357
4WT8|1|D1|C|358

Current chains

Chain D1

23S rRNA (2899-MER)

Nearby chains

Chain DD

50S ribosomal protein L4

Chain DY

50S ribosomal protein L24