HL_4WT8_164

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGUGAGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WT8_164 not in the Motif Atlas

Homologous match to HL_7RQB_022

Geometric discrepancy: 0.0732

The information below is about HL_7RQB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84085.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4WT8|1|D1|G|758
4WT8|1|D1|G|759
4WT8|1|D1|U|760
4WT8|1|D1|G|761
4WT8|1|D1|A|762
4WT8|1|D1|G|763
4WT8|1|D1|A|764
4WT8|1|D1|C|765

Current chains

Chain D1

23S rRNA (2899-MER)

Nearby chains

Chain BO

30S ribosomal protein S15

Chain BR

30S ribosomal protein S17

Chain Bb

Small subunit ribosomal RNA; SSU rRNA