HL_4WT8_174

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WT8_174 not in the Motif Atlas

Homologous match to HL_7RQB_033

Geometric discrepancy: 0.0709

The information below is about HL_7RQB_033

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41998.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

69

Unit IDs

4WT8|1|D1|G|1326
4WT8|1|D1|U|1327
4WT8|1|D1|G|1328
4WT8|1|D1|A|1329
4WT8|1|D1|G|1330
4WT8|1|D1|A|1331
4WT8|1|D1|A|1332
4WT8|1|D1|U|1333
4WT8|1|D1|C|1334

Current chains

Chain D1

23S rRNA (2899-MER)

Nearby chains

Chain DQ

50S ribosomal protein L17

Chain DW

50S ribosomal protein L22