HL_4WT8_194

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGGAUG

Length

6 nucleotides

Bulged bases

4WT8|1|D1|G|2226, 4WT8|1|D1|G|2227, 4WT8|1|D1|U|2229

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WT8_194 not in the Motif Atlas

Geometric match to HL_6U8D_003

Geometric discrepancy: 0.1892

The information below is about HL_6U8D_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32346.6

Basepair signature

cWW-F

Number of instances in this motif group

11

Unit IDs

4WT8|1|D1|C|2225
4WT8|1|D1|G|2226
4WT8|1|D1|G|2227
4WT8|1|D1|A|2228
4WT8|1|D1|U|2229
4WT8|1|D1|G|2230

Current chains

Chain D1

23S rRNA (2899-MER)

Nearby chains

Chain DB

50S ribosomal protein L2

Chain DH

50S ribosomal protein L28

Chain DI

50S ribosomal protein L9