HL_4WT8_195

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

4WT8|1|D1|G|2261

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WT8_195 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.0923

The information below is about HL_7A0S_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

4WT8|1|D1|C|2259
4WT8|1|D1|U|2260
4WT8|1|D1|G|2261
4WT8|1|D1|G|2262
4WT8|1|D1|G|2263
4WT8|1|D1|G|2264
4WT8|1|D1|C|2265
4WT8|1|D1|G|2266
4WT8|1|D1|G|2267

Current chains

Chain D1

23S rRNA (2899-MER)

Nearby chains

Chain D4

Transfer RNA; tRNA

Chain DP

50S ribosomal protein L16

Chain Da

50S ribosomal protein L27