HL_4WT8_196

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

4WT8|1|D1|A|2279, 4WT8|1|D1|C|2286

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WT8_196 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0746

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

4WT8|1|D1|C|2275
4WT8|1|D1|U|2276
4WT8|1|D1|A|2277
4WT8|1|D1|A|2278
4WT8|1|D1|A|2279
4WT8|1|D1|A|2280
4WT8|1|D1|G|2281
4WT8|1|D1|G|2282
4WT8|1|D1|U|2283
4WT8|1|D1|A|2284
4WT8|1|D1|A|2285
4WT8|1|D1|C|2286
4WT8|1|D1|G|2287

Current chains

Chain D1

23S rRNA (2899-MER)

Nearby chains

Chain DP

50S ribosomal protein L16

Chain Da

50S ribosomal protein L27