HL_4WT8_226

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGGAAACU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WT8_226 not in the Motif Atlas

Homologous match to HL_6CZR_215

Geometric discrepancy: 0.1884

The information below is about HL_6CZR_215

Detailed Annotation

GNRA with near cWW

Broad Annotation

GNRA with near cWW

Motif group

HL_82182.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

4WT8|1|Bb|G|152
4WT8|1|Bb|G|153
4WT8|1|Bb|G|154
4WT8|1|Bb|A|155
4WT8|1|Bb|A|156
4WT8|1|Bb|A|157
4WT8|1|Bb|C|158
4WT8|1|Bb|U|159

Current chains

Chain Bb

RNA (1504-MER)

Nearby chains

Chain BU

30S ribosomal protein S20