HL_4WT8_232

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CCUCCGGG

Length

8 nucleotides

Bulged bases

4WT8|1|C1|C|2166

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WT8_232 not in the Motif Atlas

Geometric match to HL_6CF2_001

Geometric discrepancy: 0.3593

The information below is about HL_6CF2_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87553.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4WT8|1|C1|C|2163
4WT8|1|C1|C|2164
4WT8|1|C1|U|2165
4WT8|1|C1|C|2166
4WT8|1|C1|C|2167
4WT8|1|C1|G|2168
4WT8|1|C1|G|2169
4WT8|1|C1|G|2170

Current chains

Chain C1

23S rRNA (2899-MER)

Nearby chains

Chain AK

30S ribosomal protein S11