HL_4WT8_236

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GCUUGUC

Length

7 nucleotides

Bulged bases

4WT8|1|D1|U|270, 4WT8|1|D1|U|271, 4WT8|1|D1|U|273

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WT8_236 not in the Motif Atlas

Homologous match to HL_9DFE_008

Geometric discrepancy: 0.5697

The information below is about HL_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WT8|1|D1|G|268
4WT8|1|D1|C|269
4WT8|1|D1|U|270
4WT8|1|D1|U|271
4WT8|1|D1|G|272
4WT8|1|D1|U|273
4WT8|1|D1|C|274

Current chains

Chain D1

23S rRNA (2899-MER)

Nearby chains

Chain DH

50S ribosomal protein L28

Chain DI

50S ribosomal protein L9