HL_4WWW_018

3D structure

PDB id

4WWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCUUGAG

Length

7 nucleotides

Bulged bases

4WWW|1|QA|U|842

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WWW_018 not in the Motif Atlas

Geometric match to HL_5TBW_022

Geometric discrepancy: 0.3883

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

4WWW|1|QA|C|840
4WWW|1|QA|C|841
4WWW|1|QA|U|842
4WWW|1|QA|U|843
4WWW|1|QA|G|844
4WWW|1|QA|A|845
4WWW|1|QA|G|846

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QR

30S ribosomal protein S18

Chain XB

30S ribosomal protein S2