HL_4WWW_048

3D structure

PDB id

4WWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCUUAGGC

Length

8 nucleotides

Bulged bases

4WWW|1|RA|U|545, 4WWW|1|RA|U|546, 4WWW|1|RA|G|549

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WWW_048 not in the Motif Atlas

Homologous match to HL_7RQB_017

Geometric discrepancy: 0.42

The information below is about HL_7RQB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WWW|1|RA|G|543
4WWW|1|RA|C|544
4WWW|1|RA|U|545
4WWW|1|RA|U|546
4WWW|1|RA|A|547
4WWW|1|RA|G|548
4WWW|1|RA|G|549
4WWW|1|RA|C|550

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RJ

50S ribosomal protein L13

Chain RR

50S ribosomal protein L21