HL_4WWW_093

3D structure

PDB id

4WWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGAAGUAG

Length

8 nucleotides

Bulged bases

4WWW|1|RA|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WWW_093 not in the Motif Atlas

Homologous match to HL_5J7L_194

Geometric discrepancy: 0.0681

The information below is about HL_5J7L_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

4WWW|1|RA|U|2528
4WWW|1|RA|G|2529
4WWW|1|RA|A|2530
4WWW|1|RA|A|2531
4WWW|1|RA|G|2532
4WWW|1|RA|U|2533
4WWW|1|RA|A|2534
4WWW|1|RA|G|2535

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R4

50S ribosomal protein L36

Chain RG

50S ribosomal protein L6