HL_4WWW_098

3D structure

PDB id

4WWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

4WWW|1|RA|G|2751, 4WWW|1|RA|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WWW_098 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.0506

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

4WWW|1|RA|C|2745
4WWW|1|RA|U|2746
4WWW|1|RA|G|2747
4WWW|1|RA|A|2748
4WWW|1|RA|A|2749
4WWW|1|RA|A|2750
4WWW|1|RA|G|2751
4WWW|1|RA|C|2752
4WWW|1|RA|A|2753
4WWW|1|RA|U|2754
4WWW|1|RA|C|2755
4WWW|1|RA|U|2756
4WWW|1|RA|A|2757
4WWW|1|RA|A|2758
4WWW|1|RA|G|2759

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R4

50S ribosomal protein L36

Chain RG

50S ribosomal protein L6

Chain RJ

50S ribosomal protein L13