HL_4WWW_111

3D structure

PDB id

4WWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WWW_111 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.1097

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4WWW|1|XA|A|320
4WWW|1|XA|A|321
4WWW|1|XA|C|322
4WWW|1|XA|U|323
4WWW|1|XA|G|324
4WWW|1|XA|A|325
4WWW|1|XA|G|326
4WWW|1|XA|A|327
4WWW|1|XA|C|328
4WWW|1|XA|A|329
4WWW|1|XA|C|330
4WWW|1|XA|G|331
4WWW|1|XA|G|332
4WWW|1|XA|U|333

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XP

30S ribosomal protein S16

Chain XT

30S ribosomal protein S20