HL_4WWW_143

3D structure

PDB id

4WWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WWW_143 not in the Motif Atlas

Homologous match to HL_4WF9_008

Geometric discrepancy: 0.1498

The information below is about HL_4WF9_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37369.2

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

9

Unit IDs

4WWW|1|YA|C|246
4WWW|1|YA|G|247
4WWW|1|YA|G|248
4WWW|1|YA|C|249
4WWW|1|YA|G|250
4WWW|1|YA|A|251
4WWW|1|YA|G|252

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y3

50S ribosomal protein L35

Chain YL

50S ribosomal protein L15

Chain YX

50S ribosomal protein L28