HL_4WWW_218

3D structure

PDB id

4WWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

4WWW|1|YA|A|1614, 4WWW|1|YA|A|1616, 4WWW|1|YA|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WWW_218 not in the Motif Atlas

Homologous match to HL_7A0S_040

Geometric discrepancy: 0.1681

The information below is about HL_7A0S_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89567.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

4WWW|1|YA|C|1612
4WWW|1|YA|G|1613
4WWW|1|YA|A|1614
4WWW|1|YA|C|1615
4WWW|1|YA|A|1616
4WWW|1|YA|C|1617
4WWW|1|YA|A|1618
4WWW|1|YA|G|1619

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y2

50S ribosomal protein L34

Chain YS

50S ribosomal protein L22