HL_4WZD_128

3D structure

PDB id

4WZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with cognate tRNA-Tyr in the P-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

4WZD|1|1G|G|1094||||P_1

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WZD_128 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.1604

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

4WZD|1|1G|G|1089||||P_1
4WZD|1|1G|U|1090||||P_1
4WZD|1|1G|U|1091||||P_1
4WZD|1|1G|A|1092||||P_1
4WZD|1|1G|A|1093||||P_1
4WZD|1|1G|G|1094||||P_1
4WZD|1|1G|U|1095||||P_1
4WZD|1|1G|C|1096||||P_1

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 12

30S ribosomal protein S2

Chain 62

30S ribosomal protein S7