HL_4WZJ_004

3D structure

PDB id

4WZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spliceosomal U4 snRNP core domain

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GGUAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WZJ_004 not in the Motif Atlas

Geometric match to HL_2CZJ_007

Geometric discrepancy: 0.1682

The information below is about HL_2CZJ_007

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_23696.2

Basepair signature

cWW-F-F

Number of instances in this motif group

8

Unit IDs

4WZJ|1|VV|G|50
4WZJ|1|VV|G|51
4WZJ|1|VV|U|52
4WZJ|1|VV|A|53
4WZJ|1|VV|A|54
4WZJ|1|VV|C|55

Current chains

Chain VV

U4 small nuclear RNA variant: Native sequence 85-145, of which nucleotides 97-104 are replaced with GAAA tetraloop and nucleotides 134-137 are replaced with GAAA tetraloop receptor.

Nearby chains

Chain LLLL

Small nuclear ribonucleoprotein E

Chain NNNN

Small nuclear ribonucleoprotein G

Chain XXXX

U4 small nuclear RNA variant: Native sequence 85-145, of which nucleotides 97-104 are replaced with GAAA tetraloop and nucleotides 134-137 are replaced with GAAA tetraloop receptor.