HL_4XEJ_006

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

4XEJ|1|A16S|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4XEJ_006 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.1325

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_36455.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4XEJ|1|A16S|G|259
4XEJ|1|A16S|G|260
4XEJ|1|A16S|U|261
4XEJ|1|A16S|A|262
4XEJ|1|A16S|A|263
4XEJ|1|A16S|U|264
4XEJ|1|A16S|G|265
4XEJ|1|A16S|G|266
4XEJ|1|A16S|C|267

Current chains

Chain A16S

16S ribosomal RNA

Nearby chains

Chain AS17

30S ribosomal protein S17

Chain AS20

30S ribosomal protein S20