HL_4XEJ_014

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4XEJ_014 not in the Motif Atlas

Homologous match to HL_6CZR_085

Geometric discrepancy: 0.1976

The information below is about HL_6CZR_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20554.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

4XEJ|1|A16S|G|617
4XEJ|1|A16S|C|618
4XEJ|1|A16S|U|619
4XEJ|1|A16S|C|620
4XEJ|1|A16S|A|621
4XEJ|1|A16S|A|622
4XEJ|1|A16S|C|623

Current chains

Chain A16S

16S ribosomal RNA

Nearby chains

Chain AS04

30S ribosomal protein S4

Chain AS16

30S ribosomal protein S16