HL_4XEJ_042

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

UUGGGAAG

Length

8 nucleotides

Bulged bases

4XEJ|1|A23S|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4XEJ_042 not in the Motif Atlas

Homologous match to HL_7RQB_010

Geometric discrepancy: 0.1896

The information below is about HL_7RQB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41998.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

69

Unit IDs

4XEJ|1|A23S|U|305
4XEJ|1|A23S|U|306
4XEJ|1|A23S|G|307
4XEJ|1|A23S|G|308
4XEJ|1|A23S|G|309
4XEJ|1|A23S|A|310
4XEJ|1|A23S|A|311
4XEJ|1|A23S|G|312

Current chains

Chain A23S

23S ribosomal RNA

Nearby chains

Chain AL24

50S ribosomal protein L24