HL_4XEJ_054

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GGUGAGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4XEJ_054 not in the Motif Atlas

Homologous match to HL_7RQB_022

Geometric discrepancy: 0.1139

The information below is about HL_7RQB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84085.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4XEJ|1|A23S|G|712
4XEJ|1|A23S|G|713
4XEJ|1|A23S|U|714
4XEJ|1|A23S|G|715
4XEJ|1|A23S|A|716
4XEJ|1|A23S|G|717
4XEJ|1|A23S|A|718
4XEJ|1|A23S|C|719

Current chains

Chain A23S

23S ribosomal RNA

Nearby chains

Chain A16S

Small subunit ribosomal RNA; SSU rRNA

Chain AS15

30S ribosomal protein S15

Chain AS17

30S ribosomal protein S17