HL_4XEJ_059

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CGAUAACG

Length

8 nucleotides

Bulged bases

4XEJ|1|A23S|U|958, 4XEJ|1|A23S|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4XEJ_059 not in the Motif Atlas

Homologous match to HL_7RQB_027

Geometric discrepancy: 0.1038

The information below is about HL_7RQB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

4XEJ|1|A23S|C|955
4XEJ|1|A23S|G|956
4XEJ|1|A23S|A|957
4XEJ|1|A23S|U|958
4XEJ|1|A23S|A|959
4XEJ|1|A23S|A|960
4XEJ|1|A23S|C|961
4XEJ|1|A23S|G|962

Current chains

Chain A23S

23S ribosomal RNA

Nearby chains

Chain A5S

5S ribosomal RNA; 5S rRNA

Chain AL16

50S ribosomal protein L16