HL_4XEJ_078

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

UUUACCAAAAA

Length

11 nucleotides

Bulged bases

4XEJ|1|A23S|A|1780, 4XEJ|1|A23S|C|1781, 4XEJ|1|A23S|C|1782, 4XEJ|1|A23S|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4XEJ_078 not in the Motif Atlas

Homologous match to HL_5J7L_178

Geometric discrepancy: 0.1567

The information below is about HL_5J7L_178

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

4XEJ|1|A23S|U|1777
4XEJ|1|A23S|U|1778
4XEJ|1|A23S|U|1779
4XEJ|1|A23S|A|1780
4XEJ|1|A23S|C|1781
4XEJ|1|A23S|C|1782
4XEJ|1|A23S|A|1783
4XEJ|1|A23S|A|1784
4XEJ|1|A23S|A|1785
4XEJ|1|A23S|A|1786
4XEJ|1|A23S|A|1787

Current chains

Chain A23S

23S ribosomal RNA

Nearby chains

Chain AL02

50S ribosomal protein L2

Chain AL34

50S ribosomal protein L34