HL_4XEJ_102

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CCGCGAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4XEJ_102 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.3818

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_45359.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

4XEJ|1|A23S|C|2855
4XEJ|1|A23S|C|2856
4XEJ|1|A23S|G|2857
4XEJ|1|A23S|C|2858
4XEJ|1|A23S|G|2859
4XEJ|1|A23S|A|2860
4XEJ|1|A23S|G|2861
4XEJ|1|A23S|G|2862

Current chains

Chain A23S

23S ribosomal RNA

Nearby chains

Chain A16S

Small subunit ribosomal RNA; SSU rRNA

Chain AL19

50S ribosomal protein L19