HL_4XEJ_111

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GGGUAAUGGCC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4XEJ_111 not in the Motif Atlas

Geometric match to HL_4WSM_226

Geometric discrepancy: 0.3964

The information below is about HL_4WSM_226

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22031.2

Basepair signature

cWW-cWW-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4XEJ|1|B16S|G|258
4XEJ|1|B16S|G|259
4XEJ|1|B16S|G|260
4XEJ|1|B16S|U|261
4XEJ|1|B16S|A|262
4XEJ|1|B16S|A|263
4XEJ|1|B16S|U|264
4XEJ|1|B16S|G|265
4XEJ|1|B16S|G|266
4XEJ|1|B16S|C|267
4XEJ|1|B16S|C|268

Current chains

Chain B16S

16S ribosomal RNA

Nearby chains

Chain BS17

30S ribosomal protein S17

Chain BS20

30S ribosomal protein S20