HL_4XEJ_162

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

UUUAGG

Length

6 nucleotides

Bulged bases

4XEJ|1|B23S|U|827, 4XEJ|1|B23S|G|830

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4XEJ_162 not in the Motif Atlas

Homologous match to HL_7RQB_025

Geometric discrepancy: 0.1289

The information below is about HL_7RQB_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53619.1

Basepair signature

cWW-F-F

Number of instances in this motif group

11

Unit IDs

4XEJ|1|B23S|U|826
4XEJ|1|B23S|U|827
4XEJ|1|B23S|U|828
4XEJ|1|B23S|A|829
4XEJ|1|B23S|G|830
4XEJ|1|B23S|G|831

Current chains

Chain B23S

23S ribosomal RNA

Nearby chains

Chain BL15

50S ribosomal protein L15