HL_4XEJ_176

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CGUACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4XEJ_176 not in the Motif Atlas

Geometric match to HL_2CZJ_007

Geometric discrepancy: 0.3763

The information below is about HL_2CZJ_007

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_23696.2

Basepair signature

cWW-F-F

Number of instances in this motif group

8

Unit IDs

4XEJ|1|B23S|C|1533
4XEJ|1|B23S|G|1534
4XEJ|1|B23S|U|1535
4XEJ|1|B23S|A|1536
4XEJ|1|B23S|C|1537
4XEJ|1|B23S|G|1538

Current chains

Chain B23S

23S ribosomal RNA

Nearby chains