HL_4XEJ_188

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

4XEJ|1|B23S|A|2030, 4XEJ|1|B23S|A|2031, 4XEJ|1|B23S|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4XEJ_188 not in the Motif Atlas

Homologous match to HL_7RQB_050

Geometric discrepancy: 0.162

The information below is about HL_7RQB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

4XEJ|1|B23S|G|2027
4XEJ|1|B23S|U|2028
4XEJ|1|B23S|G|2029
4XEJ|1|B23S|A|2030
4XEJ|1|B23S|A|2031
4XEJ|1|B23S|G|2032
4XEJ|1|B23S|A|2033
4XEJ|1|B23S|U|2034
4XEJ|1|B23S|G|2035
4XEJ|1|B23S|C|2036

Current chains

Chain B23S

23S ribosomal RNA

Nearby chains

Chain BL03

50S ribosomal protein L3

Chain BL21

50S ribosomal protein L21

Chain BL32

50S ribosomal protein L32