HL_4XEJ_192

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

4XEJ|1|B23S|A|2268, 4XEJ|1|B23S|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4XEJ_192 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.1292

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

4XEJ|1|B23S|C|2264
4XEJ|1|B23S|U|2265
4XEJ|1|B23S|A|2266
4XEJ|1|B23S|A|2267
4XEJ|1|B23S|A|2268
4XEJ|1|B23S|A|2269
4XEJ|1|B23S|G|2270
4XEJ|1|B23S|G|2271
4XEJ|1|B23S|U|2272
4XEJ|1|B23S|A|2273
4XEJ|1|B23S|A|2274
4XEJ|1|B23S|C|2275
4XEJ|1|B23S|G|2276

Current chains

Chain B23S

23S ribosomal RNA

Nearby chains

Chain BL16

50S ribosomal protein L16

Chain BL27

50S ribosomal protein L27