HL_4XEJ_214

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GAGAAAUC

Length

8 nucleotides

Bulged bases

4XEJ|1|A23S|A|229

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4XEJ_214 not in the Motif Atlas

Geometric match to HL_3FOZ_004

Geometric discrepancy: 0.3833

The information below is about HL_3FOZ_004

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_45175.1

Basepair signature

cWW-cWS-F-F

Number of instances in this motif group

5

Unit IDs

4XEJ|1|A23S|G|224
4XEJ|1|A23S|A|225
4XEJ|1|A23S|G|226
4XEJ|1|A23S|A|227
4XEJ|1|A23S|A|228
4XEJ|1|A23S|A|229
4XEJ|1|A23S|U|230
4XEJ|1|A23S|C|231

Current chains

Chain A23S

23S ribosomal RNA

Nearby chains

Chain AL15

50S ribosomal protein L15