HL_4XEJ_215

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GCUUGUC

Length

7 nucleotides

Bulged bases

4XEJ|1|A23S|U|270|||L, 4XEJ|1|A23S|U|270|||O

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4XEJ_215 not in the Motif Atlas

Homologous match to HL_9DFE_008

Geometric discrepancy: 0.4606

The information below is about HL_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4XEJ|1|A23S|G|270|||J
4XEJ|1|A23S|C|270|||K
4XEJ|1|A23S|U|270|||L
4XEJ|1|A23S|U|270|||M
4XEJ|1|A23S|G|270|||N
4XEJ|1|A23S|U|270|||O
4XEJ|1|A23S|C|270|||P

Current chains

Chain A23S

23S ribosomal RNA

Nearby chains

Chain AL09

50S ribosomal protein L9

Chain AL28

50S ribosomal protein L28