HL_4XEJ_216

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GGUUCGUGGAGCC

Length

13 nucleotides

Bulged bases

4XEJ|1|A23S|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4XEJ_216 not in the Motif Atlas

Homologous match to HL_4WF9_013

Geometric discrepancy: 0.3521

The information below is about HL_4WF9_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69139.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4XEJ|1|A23S|G|381
4XEJ|1|A23S|G|382
4XEJ|1|A23S|U|383
4XEJ|1|A23S|U|384
4XEJ|1|A23S|C|385
4XEJ|1|A23S|G|386
4XEJ|1|A23S|U|387
4XEJ|1|A23S|G|388
4XEJ|1|A23S|G|389
4XEJ|1|A23S|A|390
4XEJ|1|A23S|G|391
4XEJ|1|A23S|C|392
4XEJ|1|A23S|C|393

Current chains

Chain A23S

23S ribosomal RNA

Nearby chains

Chain AL15

50S ribosomal protein L15

Chain AL28

50S ribosomal protein L28