HL_4XEJ_232

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GCGUAAUAGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4XEJ_232 not in the Motif Atlas

Homologous match to HL_5J7L_212

Geometric discrepancy: 0.3027

The information below is about HL_5J7L_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

4XEJ|1|B23S|G|1091
4XEJ|1|B23S|C|1092
4XEJ|1|B23S|G|1093
4XEJ|1|B23S|U|1094
4XEJ|1|B23S|A|1095
4XEJ|1|B23S|A|1096
4XEJ|1|B23S|U|1097
4XEJ|1|B23S|A|1098
4XEJ|1|B23S|G|1099
4XEJ|1|B23S|C|1100

Current chains

Chain B23S

23S ribosomal RNA

Nearby chains

Chain BL11

50S ribosomal protein L11