HL_4XEJ_233

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GCGAAAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4XEJ_233 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.2455

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_45359.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

4XEJ|1|B23S|G|2373
4XEJ|1|B23S|C|2374
4XEJ|1|B23S|G|2375
4XEJ|1|B23S|A|2376
4XEJ|1|B23S|A|2377
4XEJ|1|B23S|A|2378
4XEJ|1|B23S|G|2379
4XEJ|1|B23S|C|2380

Current chains

Chain B23S

23S ribosomal RNA

Nearby chains

Chain BL18

50S ribosomal protein L18

Chain BL33

50S ribosomal protein L33