HL_4XEJ_245

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

UUCCCAUUCCGAACA

Length

15 nucleotides

Bulged bases

4XEJ|1|A5S|U|41

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4XEJ_245 not in the Motif Atlas

Homologous match to HL_9DFE_067

Geometric discrepancy: 0.162

The information below is about HL_9DFE_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97756.3

Basepair signature

cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F

Number of instances in this motif group

7

Unit IDs

4XEJ|1|A5S|U|34
4XEJ|1|A5S|U|35
4XEJ|1|A5S|C|36
4XEJ|1|A5S|C|37
4XEJ|1|A5S|C|38
4XEJ|1|A5S|A|39
4XEJ|1|A5S|U|40
4XEJ|1|A5S|U|41
4XEJ|1|A5S|C|42
4XEJ|1|A5S|C|43
4XEJ|1|A5S|G|44
4XEJ|1|A5S|A|45
4XEJ|1|A5S|A|46
4XEJ|1|A5S|C|47
4XEJ|1|A5S|A|48

Current chains

Chain A5S

5S ribosomal RNA

Nearby chains

Chain A23S

Large subunit ribosomal RNA; LSU rRNA

Chain AL05

50S ribosomal protein L5

Chain AL18

50S ribosomal protein L18