HL_4Y4O_050

3D structure

PDB id

4Y4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

CUCCGG

Length

6 nucleotides

Bulged bases

4Y4O|1|1A|C|2167

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4Y4O_050 not in the Motif Atlas

Geometric match to HL_5TBW_022

Geometric discrepancy: 0.3163

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

4Y4O|1|1A|C|2165
4Y4O|1|1A|U|2166
4Y4O|1|1A|C|2167
4Y4O|1|1A|C|2168
4Y4O|1|1A|G|2169
4Y4O|1|1A|G|2170

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains