HL_4Y4O_098

3D structure

PDB id

4Y4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

GGCAAC

Length

6 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4Y4O_098 not in the Motif Atlas

Homologous match to HL_4LFB_028

Geometric discrepancy: 0.0815

The information below is about HL_4LFB_028

Detailed Annotation

Other HL

Broad Annotation

Other HL

Motif group

HL_85603.1

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

304

Unit IDs

4Y4O|1|1a|G|1265
4Y4O|1|1a|G|1266
4Y4O|1|1a|C|1267
4Y4O|1|1a|A|1268
4Y4O|1|1a|A|1269
4Y4O|1|1a|C|1270

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1m

30S ribosomal protein S13

Chain 1s

30S ribosomal protein S19

Chain 1u

30S ribosomal protein Thx